Otokonoko Doushi Renaichuu.

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Mangas in which one or more of the main characters are trans.

There are a fair number of LGBT mangakas who write memoirs of their lives. I haven't read all of these yet.


Some other manga not on MAL (yet)

Mieri Hiranashi (lesbian)
Kanojo ga Dekinai Onna

Ayana Tsubaki (trans woman)
Watashi, Danshikou Shusshin Desu. Comic

Yoriko Kamikawa (trans woman and lesbian)
Sayonara Chinchin Welcome Manman ~OL ni naritakute Seibetsu Tekigou Shujutsu shita~

Hiaruron (lesbian), Tatsuma (lesbian)
Koharu to Minato

Fujio (lesbian)
Parlor

Ermuzibu (lesbian)
Magan he Danai

Negi (lesbian), Tanu (lesbian)
Manga de Tsudzuru Yuri na Hibi - Onna x Onna Bakappuru Dousei Nikki

Shion Fujima (lesbian)
Yurinin Lesbian Couple Ninkatsu Funtouki

Atomu (gay)
KinKiKids Honoo no Spark

Various (gay)
Massive: Gay Erotic Manga and the Men Who Make It

Rika (lesbian?)
Rikatte Kanji

Asuka Miyazaki (x-gender/non-binary)
Kyouhaku sei Shougai desu!
Kyouhaku sei Shougai Chiryou Nikki

Mochigi (gay)
Atai to hoka no ai, Atai to Nechikoyan
Gay Bar no Mochigi-san
Kono Gay to wa Tsukiaitakunai!!!

Nanami Igarashi (cross-dressing man)
Wagahai wa "Otoko no Ko" de aru!

Agaru Yamada (cross-dressing woman)
Dansou Joshi to Josou Danshi ga Kekonshimashita

Mafuyu Konishi (trans woman and bi)
Seitenkan kara Shiru Hoken Taiiku - Moto Otoko ga Danjo no Chigai ni Tsuite Kataru Ken

Chii (trans woman)
Manga de Wakaru: Taino SRS (Seitenkan・Seibetsu Tekigou Shujutsu)

Shou Arai (intersex man and pan)
"Seibetsu ga, Nai!" Hito-tachi no Hoken Taiiku
Anokoro Ore wa Joshikousei
Asia o Futari de Aruite Mita - Chuusei Oji-san to Otokonoko no Ryokouki
Chuusei Furo e Youkoso!
Ore no Mawari no "Seibetsu ga, Nai!" Hitotachi - Arai Shou no Sekumai Kouyuuroku
Saikin sa Otona to Wakamono ga sa... Suggoi Chigaku ne!?
Seibetsu ga, Nai!
Seibetsu R!
Seibetsu x Renai Hakusho

Kazuaki (gay)
Gay Fuuzoku no H Jijou

Tsushima Tsushima (pan)
Otto wa Jitsu wa Josei Deshita

Kou Usaki (gay)
Junjou Shounen: Boku ga Otoko to Yatta Riyuu
Boku no Hontou no Hanashi

(not LGBT author, partner is trans man)
Tamu Ando
Uchi no Danna ga Kawai sugiru ~tsu! Moto ♀ no Ikemen Nyuuseki Shimashita!!

Just a list of some pansexual characters in manga. Some are headcanons.

Not on MAL (yet):

Otto wa Jitsu wa Josei Deshita
Tsushima Tsushima (pan) (protagonist)

Quintet×Question
Mokuba Ao, Shirado Rie, Amano Aurum, Himari Mumei, Minayo Mana (pan and polyamorous) (main)

Manga that feature transgender boys/men.

Part 2: https://myanimelist.net/stacks/37834


Not on MAL yet:

Akarui
Maki Sanada (trans boy) (protagonist)

Oppai wo Totta Kareshi
Haruka Naruse (trans boy) (main)

Sakura-chan to Amane-kun
Amane (trans boy) (main)

Uchi no Danna ga Kawai sugiru ~tsu! Moto ♀ no Ikemen Nyuuseki Shimashita!!
Husband (trans man) (main)

Chiguhagu
Tooru/Tohru (trans man) (protagonist)

Ire kawatte mo Jibun rashiku
Yuuki (trans man, gender-bending/body swapping) (main)

Manga with transgender girls/women.

Part 2: https://myanimelist.net/stacks/29603
Part 3: https://myanimelist.net/stacks/37567


Not on MAL (yet):

"Onna" toshite Idakaretai... Seitenkan Shite, Hatsukoi wo Mou Ichido.
Sanae Takahashi (trans woman) (protagonist)
Machiko (trans woman) (supporting)

Kamisama, Boku wo Koroshite Kudasai - Otoko no Karada de Umareta Jigoku
Subaru Kawase (trans girl) (protagonist)

Sakura-chan to Amane-kun
Sakura (trans girl) (main)

Sayonara Chinchin Welcome Manman ~OL ni naritakute Seibetsu Tekigou Shujutsu shita~
Yoriko Kamikawa (trans woman) (protagonist)

Watashi, Danshikou Shusshin Desu. Comic
Ayana Tsubaki (trans woman) (protagonist)

Umanbo!
Manko Ushida (trans woman) (protagonist)

Otomeza no Jun
Jun (trans woman) (main)

Mirai kara kita Jibun ni Onna ni naru you Settaku Sarersu Hanashi
Yuuka (trans woman) (main)

Danshi Jidai no mtf no Manga/Koukousei Hen
Natsuki (trans girl) (protagonist)

Josei ga Suki na Josei to Otoko datta Josei no Hanashi
Makoto (trans woman) (main)

Natsu no Ane
Orie (trans woman) (main)

Itsuka Shinu Shoujo
Yuuki Akai (trans girl) (main)

Majo ni Naritai Otoko no Ko
Koto (trans girl) (protagonist)

Massugu Aoide
Aoi (trans girl) (main)

Otoko wo Yamete Mita - Gan ni natta no de Josou shite Koi wo suru Koto ni narimashita
Uchikiri Kamen (trans woman) (protagonist)

Oppai wo Totta Kareshi.
Aoi Ishikawa (trans girl) (main)

Barcode Fighter
Sakura Arisugawa (trans girl) (main)

Chiguhagu
Yuki (trans woman) (main)

Doumo, Newhalf desu.
Tsukasa Andou (trans woman) (protagonist)
Maria (trans woman) (main)
Reiko (trans woman) (main)

Online Game de Dekita Kareshi ni Real de Aitai to Iwareta Nekama no Otoko no Ko
Miyoto (trans girl) (protagonist)

Woman with Flowers
Jae-Hee (trans woman) (main)

Girlfriend
Kaoru Shirasaki (trans woman) (main)

Ire kawatte mo Jibun rashiku
Yuuki (trans woman, gender-bending/body swapping) (main)

Otto wa Jitsu wa Josei Deshita
Wafuko (trans woman) (main)

Onnanoko ni Naritai Otokonoko no Hanashi
Girl (trans girl) (protagonist)

Hana Ningyou to Danna Sama
Hiromi (trans woman) (protagonist)

Part 4: https://myanimelist.net/stacks/32193
Part 6: [SOON]

I try to collect as many manga as possible that are only one volume long.
Please check the genres before reading!

- Note: I haven't read every single one of them. It's a small collection for those who love short manga.
-Note 2: I might add an entry twice. I try my best to add only entries I haven't added yet.

Lesbian Autobiography Manga. Manga created by lesbian (or bi) women.

Plica-Chan Manga is also recommended.

LGBT (gay, lesbian, bisexual, binary transgender, non-binary, genderqueer, intersex, queer, pansexual, asexual, aromantic, etc.) characters in mangas I've read that are not listed as Boy's Love or Girl's Love on MAL.

Anime Version: https://myanimelist.net/stacks/31815

Part 2 (Manga): https://myanimelist.net/stacks/44923


Honorable Mentions for those that are listed as Boy's Love or Girl's Love- even though they really shouldn't be:

Bokura no Hentai
Marika Aoki (trans girl) (protagonist)
Osamu "Parou" Tamura (gender non-conforming and gay) (main)
Ryousuke "Ryou" Kijima (gender non-conforming and bi) (main)
Satoshi "Tomochi" Natsume (gender non-conforming and bi) (supporting)

Kono Koi ni Mirai wa Nai
Yuuji Manase (trans woman) (protagonist)
Kotarou "Tora" Touri (gay) (supporting)
Kaoru (trans woman) (supporting)

Ai no Shintairiku
Sara Nikotama (trans girl) (protagonist)
Misaki (trans woman) (supporting)

Koisuru Sugar Cotton
Chiaki Tabata (trans girl) (protagonist)
Kiyoka (lesbian) (main)

Sunu Sumu Muriku no Koibito
Naoki "Nao" Komura (bi) (protagonist)
Nono Nosaka (trans girl and bi) (main)
Nanako (trans man and bi) (supporting)

Kaijuu ni Natta Gay
Takashi Arashiro (gay) (protagonist)
Junpei Naruse (gay) (main)
Liam (trans man) (minor)

Bisexual Characters in Manga. Some are arguably pan.

Anime Version: https://myanimelist.net/stacks/38333

Queer/gay/lesbian/bisexual/pansexual/omnisexual/asexual/aromantic transgender characters in manga.


Not on MAL (yet):

Sayonara Chinchin Welcome Manman ~OL ni Naritakute Seibetsu Tekigo Shujutsu shimashita~
Yoriko Kamikawa (trans woman and lesbian) (protagonist)

Otto wa Jitsu wa Josei Deshita
Wafuko (trans woman and queer) (main)

Osanajimi Yuri(?)
College Girl (trans woman and lesbian) (main)

Itsuka Shinu Shoujo
Yuuki Akai (trans girl and lesbian?) (main)

Ore ga Ryousei Nante Mitomenai
Kiri (intersex boy and gay) (protagonist)

Me wo Tojite Daite
Hanafusa (intersex woman and bi) (main)

Quintet×Question
Mokuba Ao (x-gender, pan, and polyamorous) (main)