Rockman.EXE Axess

Yugioh Vrains can be said to be the deconstruction of the internet/cyberpunk genre to the point that it is dark and edgy unlike any other series made. Yusaku is the complete opposite of Netto as an anti hero vigilante seeking out vengeance and hate against his enemies whereas Netto serves the Net Society to save the day. AI like Megaman serves as a partner in hand and guides the mc throughout the series only to end up turning against him at some point. Though I can't help but compare some of the aspects: Den City Check Into the Vrains to Cross Fusion and Jack In Check Rival with red scheme colors and a Char Clone with silver hair Check Terrorists who aim to destroy the Net Society Check The ability to corrupt and absorb any beings Check Mercenaries for hire Check All of these things add up to the point that Vrains is the 2nd darkest series closest to that of Axess but much more mature and edgy that will shake your mind from imagination to reality. read more 

Has the same sort of story i guess. only difference is Rockman.EXE(Megaman Nt Warrior) has to do with the Net and Medabots is real life. In Rockman.EXE humans control beings on the net called net navis using their PETs (PErsonal Terminal) and they can carry out everyday tasks and have net battles. For Medabots they are controlled by humans in real life using Meda Watches to do everyday tasks and Robattles. 

the story but the main character of RockmanEXE use net navi and the main character of Plawres Sanshirou use doll.