Boku wa, Onnanoko

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For all my bitches and bros and non-binary hoes. 🏳️‍⚧️

Focus here is on manga where either a main character is trans or a significant story arc focuses on trans characters and issues of trans identity. Otoko no ko and crossdressing series will be ignored unless there are explicit trans messaging in there. Likewise, gender-bending series that approach sex change on supernatural terms (Boku Girl) or through sci-fi mechanics (11-nin iru!) will likely be ignored unless there's some sort of grounding element that makes queer identity explicit. Finally, any series that's just like, blatantly transphobic (F. Compo) will be ignored. Some wording will be vague to avoid spoilers.

In order:
- Claudine! (1978) - Transman protagonist
- Stop! Hibari-kun (1981) - Transwoman love interest/deuteragonist
- Paros no Ken (1986) - Transman protagonist
- Double House (1998) - Transwoman protagonist
- Hourou Musuko (2002) - Everyone's trans
- Boku wa, Onnanoko (2003) - Transwoman protagonist in titular story
- Homunculus (2003) - Important transwoman character
- IS - Otoko Demo Onna Demo Nai Sei (2004) - Trans and intersex protagonists
- J no Subete (2004) - Transwoman protagonist
- Ai no Shintairiku (2004) - Transwoman protagonist
- Densen Complex (2006) - Transwoman love interest/deuteragonist in Love Horizon
- Mascara Blues (2007) - Transwoman protagonist in "So I Can Be Myself - A Long Dream"
- Yuureitou (2010) - Transman protagonist
- Smells Like Green Spirit (2011) - Transwomen protagonists
- Bokura no Hentai (2012) - Transwoman protagonist
- Kodomo wa Wakatte Agenai (2014) - Important transwoman character
- Shimanami Tasogare (2015) - Multiple trans characters
- Umareru Seibetsu wo Machigaeta! (2016) - Transwoman autobiography
- Kono Koi ni Mirai wa nai (2016) - Transwoman protagonist
- Hanayome wa Motodanshi. (2016) - Transwoman autobiography
- Boku ga Watashi ni Naru Tame ni (2016) - Transwoman autobiography
- Fukakai na Boku no Subete o (2018) - Non-binary protagonist, everyone's trans
- Kanojo ni Naritai Kimi to Boku (2018) - Transwoman protagonist
- Boys Run the Riot (2020) - Transman protagonist

Manga with transgender girls/women.

Part 2: https://myanimelist.net/stacks/29603
Part 3: https://myanimelist.net/stacks/37567


Not on MAL (yet):

"Onna" toshite Idakaretai... Seitenkan Shite, Hatsukoi wo Mou Ichido.
Sanae Takahashi (trans woman) (protagonist)
Machiko (trans woman) (supporting)

Kamisama, Boku wo Koroshite Kudasai - Otoko no Karada de Umareta Jigoku
Subaru Kawase (trans girl) (protagonist)

Sakura-chan to Amane-kun
Sakura (trans girl) (main)

Sayonara Chinchin Welcome Manman ~OL ni naritakute Seibetsu Tekigou Shujutsu shita~
Yoriko Kamikawa (trans woman) (protagonist)

Watashi, Danshikou Shusshin Desu. Comic
Ayana Tsubaki (trans woman) (protagonist)

Umanbo!
Manko Ushida (trans woman) (protagonist)

Otomeza no Jun
Jun (trans woman) (main)

Mirai kara kita Jibun ni Onna ni naru you Settaku Sarersu Hanashi
Yuuka (trans woman) (main)

Danshi Jidai no mtf no Manga/Koukousei Hen
Natsuki (trans girl) (protagonist)

Josei ga Suki na Josei to Otoko datta Josei no Hanashi
Makoto (trans woman) (main)

Natsu no Ane
Orie (trans woman) (main)

Itsuka Shinu Shoujo
Yuuki Akai (trans girl) (main)

Majo ni Naritai Otoko no Ko
Koto (trans girl) (protagonist)

Massugu Aoide
Aoi (trans girl) (main)

Otoko wo Yamete Mita - Gan ni natta no de Josou shite Koi wo suru Koto ni narimashita
Uchikiri Kamen (trans woman) (protagonist)

Oppai wo Totta Kareshi.
Aoi Ishikawa (trans girl) (main)

Barcode Fighter
Sakura Arisugawa (trans girl) (main)

Chiguhagu
Yuki (trans woman) (main)

Doumo, Newhalf desu.
Tsukasa Andou (trans woman) (protagonist)
Maria (trans woman) (main)
Reiko (trans woman) (main)

Online Game de Dekita Kareshi ni Real de Aitai to Iwareta Nekama no Otoko no Ko
Miyoto (trans girl) (protagonist)

Woman with Flowers
Jae-Hee (trans woman) (main)

Girlfriend
Kaoru Shirasaki (trans woman) (main)

Ire kawatte mo Jibun rashiku
Yuuki (trans woman, gender-bending/body swapping) (main)

Otto wa Jitsu wa Josei Deshita
Wafuko (trans woman) (main)

More transgender boys and men in manga.

Part 1: https://myanimelist.net/stacks/28861