 If you liked
Kidou Senshi Gundam SEED
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 ...then you might like
Terra e... (TV)
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Similar settings (humans fighting übermench), both have great character cast and are generally well-produced sci-fi series with action, drama and political intrigues. Main difference is that Gundam has mecha.
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Recommended by Tyblazitar
The same type of conflict between humanity and some kind of mutants.
Also both are good with character development.
Both are sci-fi and have friends becoming enemies/enemies becoming friends.